IFeaturePlot

Visualize features in dimensional reduction space interactively

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

IFeaturePlot function

<dl><dt>object</dt>
<dd>Seurat object</dd>
<dt>feature</dt>
<dd>Feature to plot</dd>
<dt>dims</dt>
<dd>Dimensions to plot, must be a two-length numeric vector specifying x- and y-dimensions</dd>
<dt>reduction</dt>
<dd>Which dimensionality reduction to use. If not specified, first searches for umap, then tsne, then pca</dd>
<dt>slot</dt>
<dd>Which slot to pull expression data from?</dd></dl>

Arguments

Visualize features in dimensional reduction space interactively — IFeaturePlot

<dl>

<dt>object</dt>
<dd>Seurat object</dd>


<dt>feature</dt>
<dd>Feature to plot</dd>


<dt>dims</dt>
<dd>Dimensions to plot, must be a two-length numeric vector specifying x- and y-dimensions</dd>


<dt>reduction</dt>
<dd>Which dimensionality reduction to use. If not specified, first searches for umap, then tsne, then pca</dd>


<dt>slot</dt>
<dd>Which slot to pull expression data from?</dd>

</dl>

Visualize features in dimensional reduction space interactively

IFeaturePlot: Visualize features in dimensional reduction space interactively

Description

Usage

Value

Arguments