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Seurat (version 5.0.3)

ISpatialFeaturePlot: Visualize features spatially and interactively

Description

Visualize features spatially and interactively

Usage

ISpatialFeaturePlot(
  object,
  feature,
  image = NULL,
  slot = "data",
  alpha = c(0.1, 1)
)

Value

Returns final plot as a ggplot object

Arguments

object

A Seurat object

feature

Feature to visualize

image

Name of the image to use in the plot

slot

If plotting a feature, which data slot to pull from (counts, data, or scale.data)

alpha

Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.