L2Dim

Perform l2 normalization on given dimensional reduction

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

L2Dim function

<dl><dt>object</dt>
<dd>Seurat object</dd>
<dt>reduction</dt>
<dd>Dimensional reduction to normalize</dd>
<dt>new.dr</dt>
<dd>name of new dimensional reduction to store
(default is olddr.l2)</dd>
<dt>new.key</dt>
<dd>name of key for new dimensional reduction</dd></dl>

Arguments

L2-normalization — L2Dim

<dl>

<dt>object</dt>
<dd>Seurat object</dd>


<dt>reduction</dt>
<dd>Dimensional reduction to normalize</dd>


<dt>new.dr</dt>
<dd>name of new dimensional reduction to store
(default is olddr.l2)</dd>


<dt>new.key</dt>
<dd>name of key for new dimensional reduction</dd>

</dl>

L2-normalization

L2Dim: L2-normalization

Description

Usage

Value

Arguments