LabelClusters

Label clusters on a ggplot2-based scatter plot

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

LabelClusters function

<dl><dt>plot</dt>
<dd>A ggplot2-based scatter plot</dd>
<dt>id</dt>
<dd>Name of variable used for coloring scatter plot</dd>
<dt>clusters</dt>
<dd>Vector of cluster ids to label</dd>
<dt>labels</dt>
<dd>Custom labels for the clusters</dd>
<dt>split.by</dt>
<dd>Split labels by some grouping label, useful when using
<code><a href="https://ggplot2.tidyverse.org/reference/facet_wrap.html">facet_wrap</a></code> or <code><a href="https://ggplot2.tidyverse.org/reference/facet_grid.html">facet_grid</a></code></dd>
<dt>repel</dt>
<dd>Use <code>geom_text_repel</code> to create nicely-repelled labels</dd>
<dt>box</dt>
<dd>Use geom_label/geom_label_repel (includes a box around the text
labels)</dd>
<dt>geom</dt>
<dd>Name of geom to get X/Y aesthetic names for</dd>
<dt>position</dt>
<dd>How to place the label if repel = FALSE. If "median", place
the label at the median position. If "nearest" place the label at the
position of the nearest data point to the median.</dd>
<dt>...</dt>
<dd>Extra parameters to <code>geom_text_repel</code>, such as <code>size</code></dd></dl>

Arguments

Label clusters on a ggplot2-based scatter plot — LabelClusters

<dl>

<dt>plot</dt>
<dd>A ggplot2-based scatter plot</dd>


<dt>id</dt>
<dd>Name of variable used for coloring scatter plot</dd>


<dt>clusters</dt>
<dd>Vector of cluster ids to label</dd>


<dt>labels</dt>
<dd>Custom labels for the clusters</dd>


<dt>split.by</dt>
<dd>Split labels by some grouping label, useful when using
<code><a href='https://ggplot2.tidyverse.org/reference/facet_wrap.html'>facet_wrap</a></code> or <code><a href='https://ggplot2.tidyverse.org/reference/facet_grid.html'>facet_grid</a></code></dd>


<dt>repel</dt>
<dd>Use <code>geom_text_repel</code> to create nicely-repelled labels</dd>


<dt>box</dt>
<dd>Use geom_label/geom_label_repel (includes a box around the text
labels)</dd>


<dt>geom</dt>
<dd>Name of geom to get X/Y aesthetic names for</dd>


<dt>position</dt>
<dd>How to place the label if repel = FALSE. If "median", place
the label at the median position. If "nearest" place the label at the
position of the nearest data point to the median.</dd>


<dt>...</dt>
<dd>Extra parameters to <code>geom_text_repel</code>, such as <code>size</code></dd>

</dl>

Label clusters on a ggplot2-based scatter plot

LabelClusters: Label clusters on a ggplot2-based scatter plot

Description

Usage

Value

Arguments

See Also

Examples