NNtoGraph

Convert Neighbor class to an asymmetrical Graph class

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

NNtoGraph function

<dl><dt>nn.object</dt>
<dd>A neighbor class object</dd>
<dt>col.cells</dt>
<dd>Cells names of the neighbors, cell names in nn.object is used by default</dd>
<dt>weighted</dt>
<dd>Determine if use distance in the Graph</dd></dl>

Arguments

Convert Neighbor class to an asymmetrical Graph class — NNtoGraph

<dl>

<dt>nn.object</dt>
<dd>A neighbor class object</dd>


<dt>col.cells</dt>
<dd>Cells names of the neighbors, cell names in nn.object is used by default</dd>


<dt>weighted</dt>
<dd>Determine if use distance in the Graph</dd>

</dl>

Convert Neighbor class to an asymmetrical Graph class

NNtoGraph: Convert Neighbor class to an asymmetrical Graph class

Description

Usage

Value

Arguments