Project query data to reference dimensional reduction
ProjectDimReduc(
query,
reference,
mode = c("pcaproject", "lsiproject"),
reference.reduction,
combine = FALSE,
query.assay = NULL,
reference.assay = NULL,
features = NULL,
do.scale = TRUE,
reduction.name = NULL,
reduction.key = NULL,
verbose = TRUE
)
Returns a query-only or query-reference combined seurat object
Query object
Reference object
Projection mode name for projection
pcaproject: PCA projection
lsiproject: LSI projection
Name of dimensional reduction in the reference object
Determine if query and reference objects are combined
Assay used for query object
Assay used for reference object
Features used for projection
Determine if scale expression matrix in the pcaproject mode
dimensional reduction name, reference.reduction is used by default
dimensional reduction key, the key in reference.reduction is used by default
Print progress and message