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Seurat (version 5.0.3)

Read10X_h5: Read 10X hdf5 file

Description

Read count matrix from 10X CellRanger hdf5 file. This can be used to read both scATAC-seq and scRNA-seq matrices.

Usage

Read10X_h5(filename, use.names = TRUE, unique.features = TRUE)

Value

Returns a sparse matrix with rows and columns labeled. If multiple genomes are present, returns a list of sparse matrices (one per genome).

Arguments

filename

Path to h5 file

use.names

Label row names with feature names rather than ID numbers.

unique.features

Make feature names unique (default TRUE)