Run Linear Discriminant Analysis
Function to perform Linear Discriminant Analysis.
RunLDA(object, ...)# S3 method for default
RunLDA(
object,
labels,
assay = NULL,
verbose = TRUE,
ndims.print = 1:5,
nfeatures.print = 30,
reduction.key = "LDA_",
seed = 42,
...
)
# S3 method for Assay
RunLDA(
object,
assay = NULL,
labels,
features = NULL,
verbose = TRUE,
ndims.print = 1:5,
nfeatures.print = 30,
reduction.key = "LDA_",
seed = 42,
...
)
# S3 method for Seurat
RunLDA(
object,
assay = NULL,
labels,
features = NULL,
reduction.name = "lda",
reduction.key = "LDA_",
seed = 42,
verbose = TRUE,
ndims.print = 1:5,
nfeatures.print = 30,
...
)
An object of class Seurat.
Arguments passed to other methods
Meta data column with target gene class labels.
Assay to use for performing Linear Discriminant Analysis (LDA).
Print the top genes associated with high/low loadings for the PCs
Number of LDA dimensions to print.
Number of features to print for each LDA component.
Reduction key name.
Value for random seed
Features to compute LDA on
dimensional reduction name, lda by default