RunMarkVario

Wraps the functionality of markvario from the spatstat package.

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

RunMarkVario function

<dl><dt>spatial.location</dt>
<dd>A 2 column matrix giving the spatial locations of
each of the data points also in data</dd>
<dt>data</dt>
<dd>Matrix containing the data used as "marks" (e.g. gene expression)</dd>
<dt>...</dt>
<dd>Arguments passed to markvario</dd></dl>

Arguments

Run the mark variogram computation on a given position matrix and expression
matrix. — RunMarkVario

<dl>

<dt>spatial.location</dt>
<dd>A 2 column matrix giving the spatial locations of
each of the data points also in data</dd>


<dt>data</dt>
<dd>Matrix containing the data used as "marks" (e.g. gene expression)</dd>


<dt>...</dt>
<dd>Arguments passed to markvario</dd>

</dl>

Run the mark variogram computation on a given position matrix and expression
matrix.

RunMarkVario: Run the mark variogram computation on a given position matrix and expression matrix.

Description

Usage

Arguments