Plot a single dimension
SingleDimPlot(
data,
dims,
col.by = NULL,
cols = NULL,
pt.size = NULL,
shape.by = NULL,
alpha = 1,
alpha.by = NULL,
order = NULL,
label = FALSE,
repel = FALSE,
label.size = 4,
cells.highlight = NULL,
cols.highlight = "#DE2D26",
sizes.highlight = 1,
na.value = "grey50",
raster = NULL,
raster.dpi = NULL
)A ggplot2 object
Data to plot
A two-length numeric vector with dimensions to use
...
Vector of colors, each color corresponds to an identity class.
This may also be a single character or numeric value corresponding to a
palette as specified by brewer.pal.info.By
default, ggplot2 assigns colors
Adjust point size for plotting
If NULL, all points are circles (default). You can specify
any cell attribute (that can be pulled with FetchData)
allowing for both different colors and different shapes on cells.
Alpha value for plotting (default is 1)
Mapping variable for the point alpha value
Specify the order of plotting for the idents. This can be useful for crowded plots if points of interest are being buried. Provide either a full list of valid idents or a subset to be plotted last (on top).
Whether to label the clusters
Repel labels
Sets size of labels
A list of character or numeric vectors of cells to
highlight. If only one group of cells desired, can simply
pass a vector instead of a list. If set, colors selected cells to the color(s)
in cols.highlight and other cells black (white if dark.theme = TRUE);
will also resize to the size(s) passed to sizes.highlight
A vector of colors to highlight the cells as; will repeat to the length groups in cells.highlight
Size of highlighted cells; will repeat to the length groups in cells.highlight
Color value for NA points when using custom scale.
Convert points to raster format, default is NULL
which will automatically use raster if the number of points plotted is
greater than 100,000
the pixel resolution for rastered plots, passed to geom_scattermore(). Default is c(512, 512)