as.CellDataSet

as.CellDataSet.Seurat

Convert objects to CellDataSet objects

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

as.CellDataSet function

<dl><dt>x</dt>
<dd>An object to convert to class <code>CellDataSet</code></dd>
<dt>...</dt>
<dd>Arguments passed to other methods</dd>
<dt>assay</dt>
<dd>Assay to convert</dd>
<dt>reduction</dt>
<dd>Name of DimReduc to set to main reducedDim in cds</dd></dl>

Arguments

Convert objects to CellDataSet objects — as.CellDataSet

<dl>

<dt>x</dt>
<dd>An object to convert to class <code>CellDataSet</code></dd>


<dt>...</dt>
<dd>Arguments passed to other methods</dd>


<dt>assay</dt>
<dd>Assay to convert</dd>


<dt>reduction</dt>
<dd>Name of DimReduc to set to main reducedDim in cds</dd>

</dl>

Convert objects to CellDataSet objects

as.CellDataSet: Convert objects to CellDataSet objects

Description

Usage

Arguments