Seurat
objectsConvert objects to Seurat
objects
# S3 method for CellDataSet
as.Seurat(x, slot = "counts", assay = "RNA", verbose = TRUE, ...)# S3 method for SingleCellExperiment
as.Seurat(
x,
counts = "counts",
data = "logcounts",
assay = NULL,
project = "SingleCellExperiment",
...
)
A Seurat
object generated from x
An object to convert to class Seurat
Slot to store expression data as
Name of assays to convert; set to NULL
for all assays to be converted
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Arguments passed to other methods
name of the SingleCellExperiment assay to store as counts
;
set to NULL
if only normalized data are present
name of the SingleCellExperiment assay to slot as data
.
Set to NULL if only counts are present
Project name for new Seurat object
SeuratObject::as.Seurat