as.SingleCellExperiment

as.SingleCellExperiment.Seurat

Convert objects to SingleCellExperiment objects

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

David Collins

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

as.SingleCellExperiment function

<dl><dt>x</dt>
<dd>An object to convert to class <code>SingleCellExperiment</code></dd>
<dt>...</dt>
<dd>Arguments passed to other methods</dd>
<dt>assay</dt>
<dd>Assays to convert</dd></dl>

Arguments

Convert objects to SingleCellExperiment objects — as.SingleCellExperiment

<dl>

<dt>x</dt>
<dd>An object to convert to class <code>SingleCellExperiment</code></dd>


<dt>...</dt>
<dd>Arguments passed to other methods</dd>


<dt>assay</dt>
<dd>Assays to convert</dd>

</dl>

Convert objects to SingleCellExperiment objects

as.SingleCellExperiment: Convert objects to SingleCellExperiment objects

Description

Usage

Arguments