SpatialImage-class

SpatialImage

The <code>SpatialImage</code> class is a virtual class representing spatial
information for Seurat. All spatial image information must inherit from this
class for use with <code>Seurat</code> objects

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

Andrew Butler

Tim Stuart

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Yuhan Hao

SpatialImage-class function

<dl class="dl-horizontal">
<dt><code>assay</code></dt><dd>Name of assay to associate image data with; will give this image
priority for visualization when the assay is set as the active/default assay
in a <code>Seurat</code> object</dd></dl><dt><code>key</code></dt><dd>Key for the image</dd>

Slots

The SpatialImage class — SpatialImage-class

The SpatialImage class

SpatialImage-class: The SpatialImage class

Description

Arguments

Slots

See Also