SeuratObject (version 5.0.2)

AssayData-StdAssay: Get and Set Assay Data

Description

General accessor and setter functions for Assay objects. GetAssayData can be used to pull information from any of the expression matrices (eg. “counts”, “data”, or “scale.data”). SetAssayData can be used to replace one of these expression matrices

Usage

# S3 method for StdAssay
GetAssayData(object, layer = NULL, slot = deprecated(), ...)
# S3 method for StdAssay
SetAssayData(object, layer, new.data, slot = deprecated(), ...)

Value

GetAssayData: returns the specified assay data

SetAssayData: object with the assay data set

Arguments

object

An object

layer

Name of layer to get or set

slot

lifecycle::badge("deprecated") Specific assay data to get or set

...

Arguments passed to other methods

new.data

New assay data to add

Lifecycle

lifecycle::badge("superseded")

GetAssayData and SetAssayData have been superseded. To fetch expression matrices, use LayerData; to set expression data, use LayerData<-