Cells

Features

Cells.default

Cells.Assay5

Features.Assay5

Cells.DimReduc

Cells.Neighbor

Get the cell and feature names of an object

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Cells function

<dl><dt>x</dt>
<dd>An object</dd>
<dt>...</dt>
<dd>Arguments passed to other methods</dd>
<dt>layer</dt>
<dd>Layer to pull cells/features for; defaults to default layer;
if <code>NA</code>, returns all cells for the assay</dd>
<dt>simplify</dt>
<dd>Simplify the cell/feature names into a single vector; if
<code>FALSE</code>, separates each cell/feature names by layer</dd></dl>

Arguments

Cell and Feature Names — Cells

<dl>

<dt>x</dt>
<dd>An object</dd>


<dt>...</dt>
<dd>Arguments passed to other methods</dd>


<dt>layer</dt>
<dd>Layer to pull cells/features for; defaults to default layer;
if <code>NA</code>, returns all cells for the assay</dd>


<dt>simplify</dt>
<dd>Simplify the cell/feature names into a single vector; if
<code>FALSE</code>, separates each cell/feature names by layer</dd>

</dl>

Cell and Feature Names

Cells: Cell and Feature Names

Description

Usage

Value

Arguments

See Also

Examples