CellsByIdentities

Get cell names grouped by identity class

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

CellsByIdentities function

<dl><dt>object</dt>
<dd>A Seurat object</dd>
<dt>idents</dt>
<dd>A vector of identity class levels to limit resulting list to;
defaults to all identity class levels</dd>
<dt>cells</dt>
<dd>A vector of cells to grouping to</dd>
<dt>return.null</dt>
<dd>If no cells are requested, return a <code>NULL</code>;
by default, throws an error</dd></dl>

Arguments

Get cell names grouped by identity class — CellsByIdentities

<dl>

<dt>object</dt>
<dd>A Seurat object</dd>


<dt>idents</dt>
<dd>A vector of identity class levels to limit resulting list to;
defaults to all identity class levels</dd>


<dt>cells</dt>
<dd>A vector of cells to grouping to</dd>


<dt>return.null</dt>
<dd>If no cells are requested, return a <code>NULL</code>;
by default, throws an error</dd>

</dl>

Get cell names grouped by identity class

CellsByIdentities: Get cell names grouped by identity class

Description

Usage

Value

Arguments

Examples