SeuratObject (version 5.0.2)

Embeddings: Get Cell Embeddings

Description

Get Cell Embeddings

Usage

Embeddings(object, ...)
# S3 method for DimReduc
Embeddings(object, ...)
# S3 method for Seurat
Embeddings(object, reduction = "pca", ...)

Value

The embeddings matrix

Arguments

object

An object

...

Arguments passed to other methods

reduction

Name of reduction to pull cell embeddings for

Examples

# Get the embeddings directly from a DimReduc object
Embeddings(object = pbmc_small[["pca"]])[1:5, 1:5]

# Get the embeddings from a specific DimReduc in a Seurat object
Embeddings(object = pbmc_small, reduction = "pca")[1:5, 1:5]