Graph-class

Graph

The Graph class inherits from <code><a href="/link/dgCMatrix?package=SeuratObject&version=5.0.2" data-mini-rdoc="SeuratObject::dgCMatrix">dgCMatrix</a></code>.
We do this to enable future expandability of graphs.

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Graph-class function

<dl>
<dt><code>assay.used</code></dt>
<dd>Optional name of assay used to generate <code>Graph</code> object</dd></dl>

Slots

The Graph class inherits from <code><a href='https://rdrr.io/pkg/Matrix/man/sparseMatrix.html'>dgCMatrix</a></code>.
We do this to enable future expandability of graphs.

The Graph Class — Graph-class

<dl>
<dt><code>assay.used</code></dt>
<dd>Optional name of assay used to generate <code>Graph</code> object</dd>


</dl>

The Graph Class

Graph-class: The Graph Class

Description

Arguments

Slots

See Also