JackStrawData-class

JackStrawData

The JackStrawData is used to store the results of a JackStraw computation.

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

JackStrawData-class function

<dl>
<dt><code>empirical.p.values</code></dt>
<dd>Empirical p-values</dd></dl>
<dt><code>fake.reduction.scores</code></dt>
<dd>Fake reduction scores</dd>
<dt><code>empirical.p.values.full</code></dt>
<dd>Empirical p-values on full</dd>
<dt><code>overall.p.values</code></dt>
<dd>Overall p-values from ScoreJackStraw</dd>

Slots

The JackStrawData Class — JackStrawData-class

<dl>
<dt><code>empirical.p.values</code></dt>
<dd>Empirical p-values</dd>


<dt><code>fake.reduction.scores</code></dt>
<dd>Fake reduction scores</dd>


<dt><code>empirical.p.values.full</code></dt>
<dd>Empirical p-values on full</dd>


<dt><code>overall.p.values</code></dt>
<dd>Overall p-values from ScoreJackStraw</dd>


</dl>

The JackStrawData Class

JackStrawData-class: The JackStrawData Class

Description

Arguments

Slots