Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) tools:::Rd_expr_doi("10.1038/nbt.3192"), Macosko E, Basu A, Satija R, et al (2015) tools:::Rd_expr_doi("10.1016/j.cell.2015.05.002"), and Stuart T, Butler A, et al (2019) tools:::Rd_expr_doi("10.1016/j.cell.2019.05.031"), Hao Y, Hao S, et al (2021) tools:::Rd_expr_doi("10.1016/j.cell.2021.04.048") and Hao Y, et al (2023) tools:::Rd_expr_doi("10.1101/2022.02.24.481684") for more details.
Maintainer: Rahul Satija seurat@nygenome.org (ORCID)
Authors:
Paul Hoffman hoff0792@alumni.umn.edu (ORCID)
David Collins dcollins@nygenome.org (ORCID)
Yuhan Hao yhao@nygenome.org (ORCID)
Austin Hartman ahartman@nygenome.org (ORCID)
Gesmira Molla gmolla@nygenome.org (ORCID)
Andrew Butler abutler@nygenome.org (ORCID)
Tim Stuart tstuart@nygenome.org (ORCID)
Other contributors:
Madeline Kowalski mkowalski@nygenome.org (ORCID) [contributor]
Saket Choudhary schoudhary@nygenome.org (ORCID) [contributor]
Skylar Li sli@nygenome.org [contributor]
Longda Jiang ljiang@nygenome.org (ORCID) [contributor]
Jeff Farrell jfarrell@g.harvard.edu [contributor]
Shiwei Zheng szheng@nygenome.org (ORCID) [contributor]
Christoph Hafemeister chafemeister@nygenome.org (ORCID) [contributor]
Patrick Roelli proelli@nygenome.org [contributor]