as.Centroids

as.Segmentation

as.Centroids.Segmentation

as.Segmentation.Centroids

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

as.Centroids function

<dl><dt>x</dt>
<dd>An object</dd>
<dt>nsides</dt>
<dd>The number of sides to represent cells/spots; pass
<code><a href="/link/Inf?package=SeuratObject&version=5.0.2" data-mini-rdoc="SeuratObject::Inf">Inf</a></code> to plot as circles</dd>
<dt>radius</dt>
<dd>Radius of shapes when plotting</dd>
<dt>theta</dt>
<dd>Angle to adjust shapes when plotting</dd>
<dt>...</dt>
<dd>Arguments passed to other methods</dd></dl>

Arguments

Convert Segmentation Layers — as.Centroids

<dl>

<dt>x</dt>
<dd>An object</dd>


<dt>nsides</dt>
<dd>The number of sides to represent cells/spots; pass
<code><a href='https://rdrr.io/r/base/is.finite.html'>Inf</a></code> to plot as circles</dd>


<dt>radius</dt>
<dd>Radius of shapes when plotting</dd>


<dt>theta</dt>
<dd>Angle to adjust shapes when plotting</dd>


<dt>...</dt>
<dd>Arguments passed to other methods</dd>

</dl>

Convert Segmentation Layers

as.Centroids: Convert Segmentation Layers

Description

Usage

Value

Arguments