colMeans,Assay-method

colSums,Assay-method

rowMeans,Assay-method

rowSums,Assay-method

Calculate <code><a href="/link/rowSums?package=SeuratObject&version=5.0.2" data-mini-rdoc="SeuratObject::rowSums">rowSums</a></code>, <code><a href="/link/colSums?package=SeuratObject&version=5.0.2" data-mini-rdoc="SeuratObject::colSums">colSums</a></code>,
<code><a href="/link/rowMeans?package=SeuratObject&version=5.0.2" data-mini-rdoc="SeuratObject::rowMeans">rowMeans</a></code>, and <code><a href="/link/colMeans?package=SeuratObject&version=5.0.2" data-mini-rdoc="SeuratObject::colMeans">colMeans</a></code> on <code>Assay</code> objects

internal

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

colMeans,Assay-method function

<dl><dt>x</dt>
<dd>An <code>Assay</code> object</dd>
<dt>na.rm</dt>
<dd>logical. Should missing values (including <code>NaN</code>)
 be omitted from the calculations?</dd>
<dt>dims</dt>
<dd>completely ignored by the <code>Matrix</code> methods.</dd>
<dt>...</dt>
<dd>Ignored</dd>
<dt>slot</dt>
<dd>Name of assay expression matrix to calculate column/row
means/sums on</dd></dl>

Arguments

Calculate <code><a href='https://rdrr.io/r/base/colSums.html'>rowSums</a></code>, <code><a href='https://rdrr.io/r/base/colSums.html'>colSums</a></code>,
<code><a href='https://rdrr.io/r/base/colSums.html'>rowMeans</a></code>, and <code><a href='https://rdrr.io/r/base/colSums.html'>colMeans</a></code> on <code>Assay</code> objects

Row and Column Sums and Means — colMeans,Assay-method

<dl>

<dt>x</dt>
<dd>An <code>Assay</code> object</dd>


<dt>na.rm</dt>
<dd>logical. Should missing values (including <code>NaN</code>)
 be omitted from the calculations?</dd>


<dt>dims</dt>
<dd>completely ignored by the <code>Matrix</code> methods.</dd>


<dt>...</dt>
<dd>Ignored</dd>


<dt>slot</dt>
<dd>Name of assay expression matrix to calculate column/row
means/sums on</dd>

</dl>

Row and Column Sums and Means

colMeans,Assay-method: Row and Column Sums and Means

Description

Usage

Value

Arguments

See Also

Examples