merge.Assay

Merge one or more v3 assays together

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

merge.Assay function

<dl><dt>x</dt>
<dd>An <code>Assay</code> object</dd>
<dt>y</dt>
<dd>One or more <code>Assay</code> objects</dd>
<dt>add.cell.ids</dt>
<dd>A character vector of <code>length(x = c(x, y))</code>;
appends the corresponding values to the start of each objects' cell names</dd>
<dt>merge.data</dt>
<dd>Merge the data slots instead of just merging the counts
(which requires renormalization); this is recommended if the same
normalization approach was applied to all objects</dd>
<dt>labels, collapse</dt>
<dd>Currently unused</dd>
<dt>...</dt>
<dd>Ignored</dd></dl>

Arguments

Merge Assays — merge.Assay

<dl>

<dt>x</dt>
<dd>An <code>Assay</code> object</dd>


<dt>y</dt>
<dd>One or more <code>Assay</code> objects</dd>


<dt>add.cell.ids</dt>
<dd>A character vector of <code>length(x = c(x, y))</code>;
appends the corresponding values to the start of each objects' cell names</dd>


<dt>merge.data</dt>
<dd>Merge the data slots instead of just merging the counts
(which requires renormalization); this is recommended if the same
normalization approach was applied to all objects</dd>


<dt>labels, collapse</dt>
<dd>Currently unused</dd>


<dt>...</dt>
<dd>Ignored</dd>

</dl>

Merge Assays

merge.Assay: Merge Assays

Description

Usage

Value

Arguments

See Also