GetCellsInRegion

Extract cell names containing reads mapped within a given genomic region

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

GetCellsInRegion function

<dl><dt>tabix</dt>
<dd>Tabix object</dd>
<dt>region</dt>
<dd>A string giving the region to extract from the fragments file</dd>
<dt>cells</dt>
<dd>Vector of cells to include in output. If NULL, include all cells</dd></dl>

Arguments

Get cells in a region — GetCellsInRegion

<dl>

<dt>tabix</dt>
<dd>Tabix object</dd>


<dt>region</dt>
<dd>A string giving the region to extract from the fragments file</dd>


<dt>cells</dt>
<dd>Vector of cells to include in output. If NULL, include all cells</dd>

</dl>

GetCellsInRegion: Get cells in a region

Description

Usage

Value

Arguments

Examples