Signac (version 1.10.0)

GetMotifData: Retrieve a motif matrix

Description

Get motif matrix for given assay

Usage

GetMotifData(object, ...)
# S3 method for Motif
GetMotifData(object, slot = "data", ...)
# S3 method for ChromatinAssay
GetMotifData(object, slot = "data", ...)
# S3 method for Seurat
GetMotifData(object, assay = NULL, slot = "data", ...)

Value

Returns a Seurat object

Arguments

object

A Seurat object

...

Arguments passed to other methods

slot

Information to pull from object (data, pwm, meta.data)

assay

Which assay to use. Default is the current active assay

Examples

motif.obj <- SeuratObject::GetAssayData(
  object = atac_small[['peaks']], slot = "motifs"
)
GetMotifData(object = motif.obj)
GetMotifData(object = atac_small)