StringToGRanges

Convert a genomic coordinate string to a GRanges object

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

StringToGRanges function

<dl><dt>regions</dt>
<dd>Vector of genomic region strings</dd>
<dt>sep</dt>
<dd>Vector of separators to use for genomic string. First element is
used to separate chromosome and coordinates, second separator is used to
separate start and end coordinates.</dd>
<dt>...</dt>
<dd>Additional arguments passed to
<code>makeGRangesFromDataFrame</code></dd></dl>

Arguments

String to GRanges — StringToGRanges

<dl>

<dt>regions</dt>
<dd>Vector of genomic region strings</dd>


<dt>sep</dt>
<dd>Vector of separators to use for genomic string. First element is
used to separate chromosome and coordinates, second separator is used to
separate start and end coordinates.</dd>


<dt>...</dt>
<dd>Additional arguments passed to
<code>makeGRangesFromDataFrame</code></dd>

</dl>

StringToGRanges: String to GRanges

Description

Usage

Value

Arguments

Examples