TSSPlot

Plot the normalized TSS enrichment score at each position relative to the
TSS. Requires that <code>TSSEnrichment</code> has already been run on the
assay.

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

TSSPlot function

<dl><dt>object</dt>
<dd>A Seurat object</dd>
<dt>assay</dt>
<dd>Name of the assay to use. Should have the TSS enrichment
information for each cell
already computed by running <code>TSSEnrichment</code></dd>
<dt>group.by</dt>
<dd>Set of identities to group cells by</dd>
<dt>idents</dt>
<dd>Set of identities to include in the plot</dd></dl>

Arguments

Plot signal enrichment around TSSs — TSSPlot

<dl>

<dt>object</dt>
<dd>A Seurat object</dd>


<dt>assay</dt>
<dd>Name of the assay to use. Should have the TSS enrichment
information for each cell
already computed by running <code>TSSEnrichment</code></dd>


<dt>group.by</dt>
<dd>Set of identities to group cells by</dd>


<dt>idents</dt>
<dd>Set of identities to include in the plot</dd>

</dl>

TSSPlot: Plot signal enrichment around TSSs

Description

Usage

Value

Arguments