UnifyPeaks

Create a unified set of non-overlapping genomic ranges
from multiple Seurat objects containing single-cell
chromatin data.

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

UnifyPeaks function

<dl><dt>object.list</dt>
<dd>A list of Seurat objects or ChromatinAssay objects</dd>
<dt>mode</dt>
<dd>Function to use when combining genomic ranges. Can be "reduce"
(default) or "disjoin".
See <code>reduce</code>
and <code>disjoin</code>
for more information on these functions.</dd></dl>

Arguments

Unify genomic ranges — UnifyPeaks

<dl>

<dt>object.list</dt>
<dd>A list of Seurat objects or ChromatinAssay objects</dd>


<dt>mode</dt>
<dd>Function to use when combining genomic ranges. Can be "reduce"
(default) or "disjoin".
See <code>reduce</code>
and <code>disjoin</code>
for more information on these functions.</dd>

</dl>

UnifyPeaks: Unify genomic ranges

Description

Usage

Value

Arguments

Examples