granges-methods

granges

granges,ChromatinAssay-method

granges,Seurat-method

Methods for accessing <code>GRanges</code> object
information stored in a <code>ChromatinAssay</code> object.

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

granges-methods function

<dl><dt>x</dt>
<dd>A <code>ChromatinAssay</code> object</dd>
<dt>use.names</dt>
<dd>Whether the names on the genomic ranges should be
propagated to the returned object.</dd>
<dt>use.mcols</dt>
<dd>Not supported for <code>ChromatinAssay</code> objects</dd>
<dt>...</dt>
<dd>Additional arguments</dd></dl>

Arguments

<ul>
<li><code>granges(Seurat)</code>: method for Seurat objects</li>
</ul>

Functions

Access genomic ranges for ChromatinAssay objects — granges-methods

<dl>

<dt>x</dt>
<dd>A <code>ChromatinAssay</code> object</dd>


<dt>use.names</dt>
<dd>Whether the names on the genomic ranges should be
propagated to the returned object.</dd>


<dt>use.mcols</dt>
<dd>Not supported for <code>ChromatinAssay</code> objects</dd>


<dt>...</dt>
<dd>Additional arguments</dd>

</dl>

granges-methods: Access genomic ranges for ChromatinAssay objects

Description

Usage

Value

Arguments

Functions

See Also

Examples