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Signac (version 1.10.0)

inter-range-methods: Inter-range transformations for ChromatinAssay objects

Description

The range, reduce, gaps, disjoin, isDisjoint, disjointBins methods are available for ChromatinAssay objects.

Usage

# S4 method for ChromatinAssay
range(x, ..., with.revmap = FALSE, na.rm = FALSE)
# S4 method for Seurat
range(x, ..., with.revmap = FALSE, na.rm = FALSE)
# S4 method for ChromatinAssay
reduce(x, drop.empty.ranges = FALSE, ...)
# S4 method for Seurat
reduce(x, drop.empty.ranges = FALSE, ...)
# S4 method for ChromatinAssay
gaps(x, start = NA, end = NA)
# S4 method for Seurat
gaps(x, start = NA, end = NA)
# S4 method for ChromatinAssay
disjoin(x, ...)
# S4 method for Seurat
disjoin(x, ...)
# S4 method for ChromatinAssay
isDisjoint(x, ...)
# S4 method for Seurat
isDisjoint(x, ...)
# S4 method for ChromatinAssay
disjointBins(x, ...)
# S4 method for Seurat
disjointBins(x, ...)

Arguments

x

A ChromatinAssay object

...

Additional arguments

with.revmap

See inter-range-methods in the IRanges packages

na.rm

Ignored

drop.empty.ranges

See ?IRanges{inter-range-methods}

start, end

See ?IRanges{inter-range-methods}

Functions

  • range(Seurat): method for Seurat objects

  • reduce(ChromatinAssay): method for ChromatinAssay objects

  • reduce(Seurat): method for Seurat objects

  • gaps(ChromatinAssay): method for ChromatinAssay objects

  • gaps(Seurat): method for Seurat objects

  • disjoin(ChromatinAssay): method for ChromatinAssay objects

  • disjoin(Seurat): method for Seurat objects

  • isDisjoint(ChromatinAssay): method for ChromatinAssay objects

  • isDisjoint(Seurat): method for Seurat objects

  • disjointBins(ChromatinAssay): method for ChromatinAssay objects

  • disjointBins(Seurat): method for Seurat objects

See Also

  • inter-range-methods in the IRanges package.

  • inter-range-methods in the GenomicRanges package

  • ChromatinAssay-class