CoverageBrowser

Interactive version of the <code>CoveragePlot</code> function. Allows
altering the genome position interactively. The current view at any time can
be saved to a list of <code><a href="https://ggplot2.tidyverse.org/reference/ggplot.html">ggplot</a></code> objects using the "Save
plot" button, and this list of plots will be returned after ending the
browser by pressing the "Done" button.

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

CoverageBrowser function

<dl><dt>object</dt>
<dd>A Seurat object</dd>
<dt>region</dt>
<dd>A set of genomic coordinates</dd>
<dt>assay</dt>
<dd>Name of assay to use</dd>
<dt>sep</dt>
<dd>Separators for genomic coordinates if region supplied as a string
rather than GRanges object</dd>
<dt>...</dt>
<dd>Parameters passed to <code>CoveragePlot</code></dd></dl>

Arguments

Interactive version of the <code>CoveragePlot</code> function. Allows
altering the genome position interactively. The current view at any time can
be saved to a list of <code><a href='https://ggplot2.tidyverse.org/reference/ggplot.html'>ggplot</a></code> objects using the "Save
plot" button, and this list of plots will be returned after ending the
browser by pressing the "Done" button.

Genome browser — CoverageBrowser

<dl>

<dt>object</dt>
<dd>A Seurat object</dd>


<dt>region</dt>
<dd>A set of genomic coordinates</dd>


<dt>assay</dt>
<dd>Name of assay to use</dd>


<dt>sep</dt>
<dd>Separators for genomic coordinates if region supplied as a string
rather than GRanges object</dd>


<dt>...</dt>
<dd>Parameters passed to <code>CoveragePlot</code></dd>

</dl>

CoverageBrowser: Genome browser

Description

Usage

Value

Arguments