GetTSSPositions

Get the TSS positions from a set of genomic ranges containing gene positions.
Ranges can contain exons, introns, UTRs, etc, rather than the whole
transcript. Only protein coding gene biotypes are included in output.

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

GetTSSPositions function

<dl><dt>ranges</dt>
<dd>A GRanges object containing gene annotations.</dd>
<dt>biotypes</dt>
<dd>Gene biotypes to include. If NULL, use all biotypes in the
supplied gene annotation.</dd></dl>

Arguments

Find transcriptional start sites — GetTSSPositions

<dl>

<dt>ranges</dt>
<dd>A GRanges object containing gene annotations.</dd>


<dt>biotypes</dt>
<dd>Gene biotypes to include. If NULL, use all biotypes in the
supplied gene annotation.</dd>

</dl>

GetTSSPositions: Find transcriptional start sites

Description

Usage

Arguments