LookupGeneCoords

Extract the coordinates of the longest transcript for a gene stored in the
annotations within an object.

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

LookupGeneCoords function

<dl><dt>object</dt>
<dd>A Seurat object</dd>
<dt>gene</dt>
<dd>Name of a gene to extract</dd>
<dt>assay</dt>
<dd>Name of assay to use</dd></dl>

Arguments

Get gene coordinates — LookupGeneCoords

<dl>

<dt>object</dt>
<dd>A Seurat object</dd>


<dt>gene</dt>
<dd>Name of a gene to extract</dd>


<dt>assay</dt>
<dd>Name of assay to use</dd>

</dl>

LookupGeneCoords: Get gene coordinates

Description

Usage

Arguments

Examples