ValidateFragments

Verify that the cells listed in the object exist in the fragment file
and that the fragment file or index have not changed since creating the
fragment object.

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

ValidateFragments function

<dl><dt>object</dt>
<dd>A <code>Fragment</code> object</dd>
<dt>verbose</dt>
<dd>Display messages</dd>
<dt>...</dt>
<dd>Additional parameters passed to <code>ValidateCells</code></dd></dl>

Arguments

Validate Fragment object — ValidateFragments

<dl>

<dt>object</dt>
<dd>A <code>Fragment</code> object</dd>


<dt>verbose</dt>
<dd>Display messages</dd>


<dt>...</dt>
<dd>Additional parameters passed to <code>ValidateCells</code></dd>

</dl>

ValidateFragments: Validate Fragment object

Description

Usage

Arguments