atac_small

A subsetted version of 10x Genomics 10k human (hg19) PBMC scATAC-seq dataset

datasets

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

atac_small function

A Seurat object with the following assays<dl>
 <dt>peaks</dt>
<dd>A peak x cell dataset</dd> <dt>bins</dt>
<dd>A 5 kb genome bin x cell dataset</dd> <dt>RNA</dt>
<dd>A gene x cell dataset</dd>
</dl>

Format

A small example scATAC-seq dataset — atac_small

A Seurat object with the following assays<dl>
 <dt>peaks</dt>
<dd>A peak x cell dataset</dd>

 <dt>bins</dt>
<dd>A 5 kb genome bin x cell dataset</dd>

 <dt>RNA</dt>
<dd>A gene x cell dataset</dd>


</dl>

atac_small: A small example scATAC-seq dataset

Description

Usage

Arguments

Format