blacklist_hg38_unified

Manually curated genomic blacklist regions for the hg38 genome by Anshul
Kundaje and Anna Shcherbina. See
<a href="https://www.encodeproject.org/files/ENCFF356LFX/">https://www.encodeproject.org/files/ENCFF356LFX/</a> for a description of
how this blacklist was curated.

datasets

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

blacklist_hg38_unified function

Format

Anshul Kundaje
Anna Shcherbina

Author

Manually curated genomic blacklist regions for the hg38 genome by Anshul
Kundaje and Anna Shcherbina. See
<a href='https://www.encodeproject.org/files/ENCFF356LFX/'>https://www.encodeproject.org/files/ENCFF356LFX/</a> for a description of
how this blacklist was curated.

blacklist_hg38_unified: Unified genomic blacklist regions for Human GRCh38

Description

Usage

Arguments

Format

Author