SimInf (version 5.0.0)

pairs-methods: Scatterplot Matrices

Description

A matrix of scatterplots with the number of individuals is produced. The ijth scatterplot contains x[,i] plotted against x[,j].

Usage

# S4 method for SimInf_model
pairs(x, ...)

Arguments

x

The model to plot

...

Additional arguments affecting the plot produced.

Examples

# NOT RUN {
## Create an 'SIR' model with 10 nodes and initialise
## it with 99 susceptible individuals and one infected
## individual. Let the model run over 100 days.
model <- SIR(u0 = data.frame(S = rep(99, 10),
                             I = rep(1, 10),
                             R = rep(0, 10)),
             tspan = 1:100,
             beta = 0.16,
             gamma = 0.077)

## Run the model and save the result.
result <- run(model, threads = 1, seed = 1)

## Create a scatter plot
pairs(result)
# }