SnapATAC (version 1.0.0)

boxPlotFeature: Feature Enrichment Boxplot

Description

Feature Enrichment Boxplot

Usage

boxPlotFeature(obj, feature, outline, ylab, main, add.point, point.size,
  point.shape, point.alpha, pdf.file.name, pdf.height, pdf.width)

Arguments

obj

A snap object.

feature

Feature enrichment value for each cell.

outline

If 'outline' is not true, the outliers are not drawn (as points whereas S+ uses lines).

ylab

Name of ylab.

main

Main title.

add.point

If 'add.point' is true, scatter points will be added to the top of the boxplot.

point.size

Point size [0.5].

point.shape

Point shape type [19].

point.alpha

Point transparancy level [0.9].

pdf.file.name

pdf file name to save the plot [NULL].

pdf.height

the height of the graphics region in inches [7].

pdf.width

the width of the graphics region in inches [7].

Examples

# NOT RUN {
data(demo.sp);
boxPlotFeature(demo.sp, rnorm(nrow(demo.sp)));

# }