alloc

Allocates <code>tgt</code> of something to <code>length(bucketLims)</code> different "buckets" subject to the constraint that each bucket has a maximum value of <code>bucketLims</code> that cannot be exceeded. By default counts are distributed equally between buckets, but weights can be provided using <code>ws</code> to have the redistribution prefer certain buckets over others.

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Matthew Young

SoupX

Single Cell mRNA Soup eXterminator

alloc function

<dl><dt>tgt</dt>
<dd>Value to distribute between buckets.</dd>
<dt>bucketLims</dt>
<dd>The maximum value that each bucket can take. Must be a vector of positive values.</dd>
<dt>ws</dt>
<dd>Weights to be used for each bucket. Default value makes all buckets equally likely.</dd></dl>

Arguments

Allocate values to "buckets" subject to weights and constraints — alloc

<dl>

<dt>tgt</dt>
<dd>Value to distribute between buckets.</dd>


<dt>bucketLims</dt>
<dd>The maximum value that each bucket can take. Must be a vector of positive values.</dd>


<dt>ws</dt>
<dd>Weights to be used for each bucket. Default value makes all buckets equally likely.</dd>

</dl>

alloc: Allocate values to "buckets" subject to weights and constraints

Description

Usage

Value

Arguments