plotSoupCorrelation

Calculates an expression profile by aggregating counts across all cells and plots this (on a log10 scale) against the expression profile of the soup.

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Matthew Young

SoupX

Single Cell mRNA Soup eXterminator

plotSoupCorrelation function

<dl><dt>sc</dt>
<dd>A SoupChannel object.</dd></dl>

Arguments

Plot correlation of expression profiles of soup and aggregated cells — plotSoupCorrelation

<dl>

<dt>sc</dt>
<dd>A SoupChannel object.</dd>

</dl>

plotSoupCorrelation: Plot correlation of expression profiles of soup and aggregated cells

Description

Usage

Value

Arguments