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StAMPP (version 1.5.1)

potato: Example genotype input format

Description

A data frame containing Solcap potato genotype data in tetraploid and diploid format as an example of the input format required by StAMPP

Usage

data(potato)

Arguments

Format

A data frame with 30 observations on the following 48 variables.

Sample

a factor with levels ind1 ind106 ind140 ind141 ind142 ind143 ind144 ind15 ind16 ind161 ind162 ind17 ind18 ind2 ind257 ind258 ind259 ind290 ind291 ind292 ind293 ind294 ind295 ind296 ind3 ind4 ind5 ind6 ind94 ind95

Pop

a factor with levels 2x_A_Population 4x_B_Population 4x_C_Population

Ploidy

a numeric vector

Format

a factor with levels BiA

solcap_snp_c1_1

a factor with levels AA AAAA AAAB AABB AB

solcap_snp_c1_1000

a factor with levels AAAB AABB AB ABBB BB BBBB

solcap_snp_c1_10000

a factor with levels AA AAAB AABB AB ABBB BBBB

solcap_snp_c1_10001

a factor with levels AAAA AAAB AABB AB ABBB BB BBBB

solcap_snp_c1_10011

a factor with levels AA AB ABBB BBBB

solcap_snp_c1_10012

a factor with levels AAAA AAAB AB BB

solcap_snp_c1_10031

a factor with levels AA AAAA AAAB AABB AB ABBB BBBB

solcap_snp_c1_10042

a factor with levels AB ABBB BB BBBB

solcap_snp_c1_10050

a factor with levels AB BB BBBB

solcap_snp_c1_10054

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_10109

a factor with levels AA AAAA AAAB AABB AB ABBB BBBB

solcap_snp_c1_10130

a factor with levels -9 AA AAAA AAAB AABB AB ABBB

solcap_snp_c1_10157

a factor with levels AABB AB ABBB BB BBBB

solcap_snp_c1_10202

a factor with levels AABB AB ABBB BB BBBB

solcap_snp_c1_10252

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_10253

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_10255

a factor with levels AAAB AABB AB ABBB BB BBBB

solcap_snp_c1_1029

a factor with levels AA AAAB AABB ABBB

solcap_snp_c1_10295

a factor with levels AA AAAA AAAB AABB

solcap_snp_c1_10297

a factor with levels -9 AA AAAB AABB AB ABBB BBBB

solcap_snp_c1_10351

a factor with levels AAAB AABB ABBB BB BBBB

solcap_snp_c1_10384

a factor with levels AA AAAA AAAB AABB AB ABBB

solcap_snp_c1_10397

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_10457

a factor with levels AAAB AABB ABBB BB BBBB

solcap_snp_c1_10491

a factor with levels AABB AB ABBB BB BBBB

solcap_snp_c1_10492

a factor with levels AABB AB ABBB BB BBBB

solcap_snp_c1_10494

a factor with levels AAAA AAAB AB BB BBBB

solcap_snp_c1_10579

a factor with levels AA AAAB AABB AB ABBB BBBB

solcap_snp_c1_10646

a factor with levels AA AAAA AAAB AABB

solcap_snp_c1_10669

a factor with levels AA AAAA AAAB AABB AB

solcap_snp_c1_10715

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_10737

a factor with levels AABB AB ABBB BB BBBB

solcap_snp_c1_10743

a factor with levels -9 AABB AB ABBB BB BBBB

solcap_snp_c1_10762

a factor with levels AA AAAA AAAB AABB AB ABBB

solcap_snp_c1_10855

a factor with levels AA AAAB AABB AB ABBB BBBB

solcap_snp_c1_10873

a factor with levels AA AAAA AAAB AABB AB ABBB BBBB

solcap_snp_c1_10879

a factor with levels -9 AAAB AABB AB ABBB BB

solcap_snp_c1_10900

a factor with levels AA AAAA AAAB AABB AB ABBB

solcap_snp_c1_10932

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_1094

a factor with levels AAAA AAAB AABB AB ABBB BB

solcap_snp_c1_11137

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_11144

a factor with levels AA AAAA AAAB AABB ABBB

solcap_snp_c1_11196

a factor with levels AA AAAA AAAB AABB AB

solcap_snp_c1_11206

a factor with levels AAAB AABB ABBB BB BBBB

Examples

Run this code
# NOT RUN {
data(potato, package="StAMPP")
# }

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