getClpindepX-methods

getClpindepX,kin-method

getClpindepX,spec-method

getClpindepX,mass-method

getClpindepX,amp-method

getClpindepX

Gets the matrix associated with nonlinear parameter estimates for the
case that this matrix is not re-calculated per conditionally linear
parameter.

methods

A problem solving environment (PSE) for fitting separable
nonlinear models to measurements arising in physics and chemistry
experiments, as described by Mullen & van Stokkum (2007)
<doi:10.18637/jss.v018.i03> for its use in fitting time resolved
spectroscopy data, and as described by Laptenok et al. (2007)
<doi:10.18637/jss.v018.i08> for its use in fitting Fluorescence
Lifetime Imaging Microscopy (FLIM) data, in the study of Förster
Resonance Energy Transfer (FRET). `TIMP` also serves as the
computation backend for the `GloTarAn` software, a graphical user
interface for the package, as described in Snellenburg et al. (2012)
<doi:10.18637/jss.v049.i03>.

Joris J Snellenburg

TIMP

Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy

Katharine M. Mullen

Joris Snellenburg

Sergey P. Laptenok

David Nicolaides

Ivo H.M. van Stokkum

getClpindepX-methods function

<dl> <dt>model</dt>
<dd>Object of class <code>dat</code>; function switches on this
argument.</dd><dt>multimodel</dt>
<dd>Object of class <code>multimodel</code> used in standard error
determination</dd><dt>theta</dt>
<dd>Vector of nonlinear parameter estimates.</dd><dt>returnX</dt>
<dd>logical indicating whether to return a vectorized version of
the <code>X</code> matrix</dd><dt>rawtheta</dt>
<dd>vector of nonlinear parameters; used in standard error
determination</dd><dt>dind</dt>
<dd>numeric indicating the dataset index; used in standard error
determination</dd></dl>

Arguments

Katharine M. Mullen, Ivo H. M. van Stokkum

Author

Generic function getClpindepX in Package `TIMP' — getClpindepX-methods

<dl>

 <dt>model</dt>
<dd>Object of class <code>dat</code>; function switches on this
argument.</dd>

<dt>multimodel</dt>
<dd>Object of class <code>multimodel</code> used in standard error
determination</dd>

<dt>theta</dt>
<dd>Vector of nonlinear parameter estimates.</dd>

<dt>returnX</dt>
<dd>logical indicating whether to return a vectorized version of
the <code>X</code> matrix</dd>

<dt>rawtheta</dt>
<dd>vector of nonlinear parameters; used in standard error
determination</dd>

<dt>dind</dt>
<dd>numeric indicating the dataset index; used in standard error
determination</dd>

</dl>

Generic function getClpindepX in Package `TIMP'

getClpindepX-methods: Generic function getClpindepX in Package `TIMP'

Description

Usage

Arguments

Author

See Also