massopt-class

massopt

Class "massopt" stores options for fitting and plotting models
models for mass spectrometry data
in particular; this is a subclass of class <code>opt</code> that contains 
options applicable to all model types

classes

A problem solving environment (PSE) for fitting separable
nonlinear models to measurements arising in physics and chemistry
experiments, as described by Mullen & van Stokkum (2007)
<doi:10.18637/jss.v018.i03> for its use in fitting time resolved
spectroscopy data, and as described by Laptenok et al. (2007)
<doi:10.18637/jss.v018.i08> for its use in fitting Fluorescence
Lifetime Imaging Microscopy (FLIM) data, in the study of Förster
Resonance Energy Transfer (FRET). `TIMP` also serves as the
computation backend for the `GloTarAn` software, a graphical user
interface for the package, as described in Snellenburg et al. (2012)
<doi:10.18637/jss.v049.i03>.

Joris J Snellenburg

TIMP

Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy

Katharine M. Mullen

Joris Snellenburg

Sergey P. Laptenok

David Nicolaides

Ivo H.M. van Stokkum

massopt-class function

Objects can be created by calls of the form <code>new("massopt", ...)</code> or
<code>massopt(...)</code>

Objects from the Class

<dl>
	 <dt><code>axis.by</code>:</dt>
<dd>Object of class <code>"numeric"</code> that
	 allows labels on the bars representing the mass spectra to
	 to skipped, e.g., <code>axis.by=2</code> will add a label to
	 every second bar</dd>	 <dt><code>scale.concen</code>:</dt>
<dd>Object of class <code>"logical"</code> that
	 scales the concentration matrix using the algorithm found
	 in the function <code>scaleConList</code>.</dd>	 <dt><code>nummaxtraces</code>:</dt>
<dd>Object of class
	 <code>"nummaxtraces"</code> that defaults to zero; if greater
	 than zero then this number of the traces with the maximum
	 amplitude are plotted</dd> 
</dl>

Slots

Katharine M. Mullen, Ivo H. M. van Stokkum

Author

Class "massopt" stores options for fitting and plotting models
for mass spectrometry data — massopt-class

<dl>
	 <dt><code>axis.by</code>:</dt>
<dd>Object of class <code>"numeric"</code> that
	 allows labels on the bars representing the mass spectra to
	 to skipped, e.g., <code>axis.by=2</code> will add a label to
	 every second bar</dd>

	 <dt><code>scale.concen</code>:</dt>
<dd>Object of class <code>"logical"</code> that
	 scales the concentration matrix using the algorithm found
	 in the function <code>scaleConList</code>.</dd>

	 <dt><code>nummaxtraces</code>:</dt>
<dd>Object of class
	 <code>"nummaxtraces"</code> that defaults to zero; if greater
	 than zero then this number of the traces with the maximum
	 amplitude are plotted</dd>

 
</dl>

massopt-class: Class "massopt" stores options for fitting and plotting models for mass spectrometry data

Description

Arguments

Objects from the Class

Slots

Author

Details

See Also