sumKinSpecEst

Makes a summary plot of spectra associated with kinetic components
alongside a plot showing parameter estimates for, by default, kinetic
parameters. If the analysis had more parameters in the <code>addEst</code> slot
of the argument <code>opt</code>, then more parameters are displayed.
Note that this summary leaves out the spectra associated with coherent
artifact or scatter.

file

A problem solving environment (PSE) for fitting separable
nonlinear models to measurements arising in physics and chemistry
experiments, as described by Mullen & van Stokkum (2007)
<doi:10.18637/jss.v018.i03> for its use in fitting time resolved
spectroscopy data, and as described by Laptenok et al. (2007)
<doi:10.18637/jss.v018.i08> for its use in fitting Fluorescence
Lifetime Imaging Microscopy (FLIM) data, in the study of Förster
Resonance Energy Transfer (FRET). `TIMP` also serves as the
computation backend for the `GloTarAn` software, a graphical user
interface for the package, as described in Snellenburg et al. (2012)
<doi:10.18637/jss.v049.i03>.

Joris J Snellenburg

TIMP

Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy

Katharine M. Mullen

Joris Snellenburg

Sergey P. Laptenok

David Nicolaides

Ivo H.M. van Stokkum

sumKinSpecEst function

<dl> <dt>listFits</dt>
<dd>list of objects returned by the <code>fitModel</code> function</dd> <dt>addtitle</dt>
<dd>logical regarding whether to add a title; if TRUE and
 <code>customtitle</code> is not given then the title is
 <code> "Summary of EADS for: "</code> plus the analysis titles</dd> <dt>customtitle</dt>
<dd>character vector containing a title</dd> <dt>preps</dt>
<dd>character vector describing the prefix of the postscript
 filename given as output</dd> <dt>ylimlist</dt>
<dd>list with elements <code>list(ind, ylim)</code>. <code>ind</code> is
 an index into <code>listFits</code>; <code>ylim</code> is the desired <code>ylim</code> for
 the plot for that analysis</dd> <dt>kinspecerr</dt>
<dd>logical regarding whether to add error bars for to the
estimated spectra.</dd></dl>

Arguments

Katharine M. Mullen, Ivo H. M. van Stokkum

Author

Makes a summary plot of spectra associated with kinetic components
alongside a plot showing parameter estimates — sumKinSpecEst

<dl>

 <dt>listFits</dt>
<dd>list of objects returned by the <code>fitModel</code> function</dd>

 <dt>addtitle</dt>
<dd>logical regarding whether to add a title; if TRUE and
 <code>customtitle</code> is not given then the title is
 <code> "Summary of EADS for: "</code> plus the analysis titles</dd>

 <dt>customtitle</dt>
<dd>character vector containing a title</dd>

 <dt>preps</dt>
<dd>character vector describing the prefix of the postscript
 filename given as output</dd>

 <dt>ylimlist</dt>
<dd>list with elements <code>list(ind, ylim)</code>. <code>ind</code> is
 an index into <code>listFits</code>; <code>ylim</code> is the desired <code>ylim</code> for
 the plot for that analysis</dd>

 <dt>kinspecerr</dt>
<dd>logical regarding whether to add error bars for to the
estimated spectra.</dd>

</dl>

sumKinSpecEst: Makes a summary plot of spectra associated with kinetic components alongside a plot showing parameter estimates

Description

Usage

Value

Arguments

Author

Details

See Also