Sim_Trees1

Sim_Trees1025

Sim_Trees105

Sim_Trees11

Sim_Trees12

Sim_Trees15

Sim_Trees110

Six data sets of 1000 gene trees simulated from the Coalescant model based on
a specified species with each data set possessing a ratio of species depth to
effective population of 0.25, 0.5, 1, 2, 5, and 10.

datasets

tree

matrix

gene

simulated

where

ultrametric

phylogenetic

1000

each

representing

Suite of tropical geometric tools for use in machine learning applications. These methods may be summarized in the following references: Yoshida, et al. (2022) <doi:10.2140/astat.2023.14.37>, Barnhill et al. (2023) <doi:10.48550/arXiv.2303.02539>, Barnhill and Yoshida (2023) <doi:10.3390/math11153433>, Aliatimis et al. (2023) <doi:10.1007/s11538-024-01327-8>, Yoshida et al. (2022) <doi:10.1109/TCBB.2024.3420815>, and Yoshida et al. (2019) <doi:10.1007/s11538-018-0493-4>.

David Barnhill

Tropical Geometry Tools for Machine Learning

Ruriko Yoshida

Georgios Aliatimis

Keiji Miura

Sim_Trees1 function

An object of class <code>matrix</code> (inherits from <code>array</code>) with 1000 rows and 45 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1000 rows and 45 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1000 rows and 45 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1000 rows and 45 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1000 rows and 45 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1000 rows and 45 columns.

Format

Six data sets of phylogenetic trees data simulated from the Coalescant model. — Sim_Trees1

Six data sets of phylogenetic trees data simulated from the Coalescant model.

Sim_Trees1: Six data sets of phylogenetic trees data simulated from the Coalescant model.

Description

Usage

Arguments

Format