convert.to.tree

This function constructs a phylogenetic tree from an ultrametric.

Suite of tropical geometric tools for use in machine learning applications. These methods may be summarized in the following references: Yoshida, et al. (2022) <doi:10.2140/astat.2023.14.37>, Barnhill et al. (2023) <doi:10.48550/arXiv.2303.02539>, Barnhill and Yoshida (2023) <doi:10.3390/math11153433>, Aliatimis et al. (2023) <doi:10.1007/s11538-024-01327-8>, Yoshida et al. (2022) <doi:10.1109/TCBB.2024.3420815>, and Yoshida et al. (2019) <doi:10.1007/s11538-018-0493-4>.

David Barnhill

Tropical Geometry Tools for Machine Learning

Ruriko Yoshida

Georgios Aliatimis

Keiji Miura

convert.to.tree function

<dl><dt>n</dt>
<dd>is the number of leaves</dd>
<dt>L</dt>
<dd>is a vector of labels (strings) of leaves</dd>
<dt>u</dt>
<dd>is an ultrametric</dd></dl>

Arguments

Ruriko Yoshida <a href="/link/ryoshida%40nps.edu?package=TML&version=2.3.0" data-mini-rdoc="TML::ryoshida@nps.edu">ryoshida@nps.edu</a>

Author

Create a phylogenetic tree from an ultrametric — convert.to.tree

<dl>

<dt>n</dt>
<dd>is the number of leaves</dd>


<dt>L</dt>
<dd>is a vector of labels (strings) of leaves</dd>


<dt>u</dt>
<dd>is an ultrametric</dd>

</dl>

Ruriko Yoshida <a href='mailto:ryoshida@nps.edu'>ryoshida@nps.edu</a>

convert.to.tree: Create a phylogenetic tree from an ultrametric

Description

Usage

Value

Arguments

Author

Examples