normaliz.tree

This function normalizes the height of a phylogenetic tree

Suite of tropical geometric tools for use in machine learning applications. These methods may be summarized in the following references: Yoshida, et al. (2022) <doi:10.2140/astat.2023.14.37>, Barnhill et al. (2023) <doi:10.48550/arXiv.2303.02539>, Barnhill and Yoshida (2023) <doi:10.3390/math11153433>, Aliatimis et al. (2023) <doi:10.1007/s11538-024-01327-8>, Yoshida et al. (2022) <doi:10.1109/TCBB.2024.3420815>, and Yoshida et al. (2019) <doi:10.1007/s11538-018-0493-4>.

David Barnhill

Tropical Geometry Tools for Machine Learning

Ruriko Yoshida

Georgios Aliatimis

Keiji Miura

normaliz.tree function

<dl><dt>D</dt>
<dd>numeric vector; ultrametric equidistant tree</dd>
<dt>h</dt>
<dd>desired height; defaults to 1</dd></dl>

Arguments

Ruriko Yoshida <a href="/link/ryoshida%40nps.edu?package=TML&version=2.3.0" data-mini-rdoc="TML::ryoshida@nps.edu">ryoshida@nps.edu</a>

Author

Normalize a phylogenetic tree — normaliz.tree

<dl>

<dt>D</dt>
<dd>numeric vector; ultrametric equidistant tree</dd>


<dt>h</dt>
<dd>desired height; defaults to 1</dd>

</dl>

Ruriko Yoshida <a href='mailto:ryoshida@nps.edu'>ryoshida@nps.edu</a>

normaliz.tree: Normalize a phylogenetic tree

Description

Usage

Value

Arguments

Author

Examples