TML (version 2.3.0)

pw.trop.dist: Constructs the dissimilarity matrix for a set of ultrametrics

Description

Constructs the dissimilarity matrix based on the tropical distance between points in a dataset

Usage

pw.trop.dist(D1, D2)

Value

matrix; dissimilarity matrix showing the tropical pairwise distance between each point

Arguments

D1

matrix of ultrametrics

D2

matrix of ultrametrics

Author

Ruriko Yoshida

References

Weyenberg, G., Huggins, P., Schardl, C., Howe, D. K., & Yoshida, R. (2014). kdetrees: Nonparametric Estimation of Phylogenetic Tree Distributions. In Bioinformatics.

Yoshida, Ruriko, David Barnhill, Keiji Miura and Daniel Howe (2022). Tropical Density Estimation of Phylogenetic Trees.

https://github.com/grady/kdetrees/blob/master/R/dist.diss.R

Examples

# \donttest{
T1<-Sim_Trees15
T2<-Sim_Trees25
D <- rbind(T1, T2[1,])
pw.trop.dist(D, D)
# }