TPP (version 2.2.3)

tppQCPlotsCorrelateExperiments: Visually compare fold changes of different TPP experiments.

Description

Plot pairwise relationships between the proteins in different TPP experiments.

Usage

tppQCPlotsCorrelateExperiments(tppData, annotStr = "", path = NULL, ggplotTheme = tppDefaultTheme())

Arguments

tppData

List of expressionSets with data to be plotted.

annotStr

String with additional information to be added to the plot.

path

Location where to store resulting plot.

ggplotTheme

ggplot theme for the created plots.

Value

List of plots for each experiment.

See Also

tppDefaultTheme

Examples

data(hdacTR_smallExample)
tpptrData <- tpptrImport(configTable=hdacTR_config, data=hdacTR_data)
# Quality control (QC) plots BEFORE normalization:
tppQCPlotsCorrelateExperiments(tppData=tpptrData, 
annotStr="Non-normalized Fold Changes")
# Quality control (QC) plots AFTER normalization:
tpptrNorm <- tpptrNormalize(data=tpptrData, normReqs=tpptrDefaultNormReqs())
tpptrDataNormalized <- tpptrNorm$normData
tppQCPlotsCorrelateExperiments(tppData=tpptrDataNormalized, 
annotStr="Normalized Fold Changes")